Weighted correlation network analysis, also known as weighted gene co-expression network analysis (WGCNA), is a widely used data mining method especially for studying biological networks based on pairwise correlations between variables. While it can be applied to most high-dimensional data sets, it has been most widely used in genomic applications. It allows one to define modules (clusters), intramodular hubs, and network nodes with regard to module membership, to study the relationships between co-expression modules, and to compare the network topology of different networks (differential network analysis). WGCNA can be used as a data reduction technique (related to oblique factor analysis), as a clustering method (fuzzy clustering), as a feature selection method (e.g. as gene screening method), as a framework for integrating complementary (genomic) data (based on weighted correlations between quantitative variables), and as a data exploratory technique. Although WGCNA incorporates traditional data exploratory techniques, its intuitive network language and analysis framework transcend any standard analysis technique. Since it uses network methodology and is well suited for integrating complementary genomic data sets, it can be interpreted as systems biologic or systems genetic data analysis method. By selecting intramodular hubs in consensus modules, WGCNA also gives rise to network based meta analysis techniques. (Wikipedia).
How to find correlation in Excel with the Data Analysis Toolpak
Click this link for more information on correlation coefficients plus more FREE Excel videos and tips: http://www.statisticshowto.com/what-is-the-pearson-correlation-coefficient/
From playlist Regression Analysis
RELATIONSHIPS Between Variables: Standardized Covariance (7-1)
Correlation is a way of measuring the extent to which two variables are related. The term correlation is synonymous with “relationship.” Variables are related when changes in one variable are consistently associated with changes in another variable. Dr. Daniel reviews Variance, Covariance,
From playlist Correlation And Regression in Statistics (WK 07 - QBA 237)
Estimate the Correlation Coefficient Given a Scatter Plot
This video explains how to estimate the correlation coefficient given a scatter plot.
From playlist Performing Linear Regression and Correlation
Covariance (14 of 17) Covariance Matrix "Normalized" - Correlation Coefficient
Visit http://ilectureonline.com for more math and science lectures! To donate:a http://www.ilectureonline.com/donate https://www.patreon.com/user?u=3236071 We will find the “normalized” matrix (or the correlation coefficients) from the covariance matrix from the previous video using 3 sa
From playlist COVARIANCE AND VARIANCE
Covariance Definition and Example
What is covariance? How do I find it? Step by step example of a solved covariance problem for a sample, along with an explanation of what the results mean and how it compares to correlation. 00:00 Overview 03:01 Positive, Negative, Zero Correlation 03:19 Covariance for a Sample Example
From playlist Correlation
Limits of correlation (applied)
Correlation is a standardized covariance (i.e., translated into unit-less form with volatilities). It cannot be used alone: (i) it can be "distorted" by low volatilities, and (ii) it does not give information revealed by the scatter (in this example, both hedge fund series are similarly co
From playlist Statistics: Introduction
This video explains how to find the correlation coefficient which describes the strength of the linear relationship between two variables x and y. My Website: https://www.video-tutor.net Patreon: https://www.patreon.com/MathScienceTutor Amazon Store: https://www.amazon.com/shop/theorga
From playlist Statistics
Function Entropy in Deep-Learning Networks – Mean Field Behaviour and Large... by David Saad
DISCUSSION MEETING : STATISTICAL PHYSICS OF MACHINE LEARNING ORGANIZERS : Chandan Dasgupta, Abhishek Dhar and Satya Majumdar DATE : 06 January 2020 to 10 January 2020 VENUE : Madhava Lecture Hall, ICTS Bangalore Machine learning techniques, especially “deep learning” using multilayer n
From playlist Statistical Physics of Machine Learning 2020
Scatterplots, Part 3: The Formula Behind the Correlation Coefficient
We use the Scatterplots & Correlation app to explain the formula behind the correlation coefficient. The app allows you to find and plot the z-scores, showing the 4 quadrants in which points on the scatterplot can fall.
From playlist Chapter 3: Relationships between two variables
Areejit Samal (7/25/22): Forman-Ricci curvature: A geometry-inspired measure with wide applications
Abstract: In the last few years, we have been active in the development of geometry-inspired measures for the edge-based characterization of real-world complex networks. In particular, we were first to introduce a discretization of the classical Ricci curvature proposed by R. Forman to the
From playlist Applied Geometry for Data Sciences 2022
Eun-Ah Kim - Machine Learning for Quantum Simulation - IPAM at UCLA
Recorded 15 April 2022. Eun-Ah Kim of Cornell University presents "Machine Learning for Quantum Simulation" at IPAM's Model Reduction in Quantum Mechanics Workshop. Learn more online at: http://www.ipam.ucla.edu/programs/workshops/workshop-ii-model-reduction-in-quantum-mechanics/?tab=sched
From playlist 2022 Model Reduction in Quantum Mechanics Workshop
Restricted Boltzmann Machines: Stastical Physics and applications... by Simona Cocco
DISCUSSION MEETING : STATISTICAL PHYSICS OF MACHINE LEARNING ORGANIZERS : Chandan Dasgupta, Abhishek Dhar and Satya Majumdar DATE : 06 January 2020 to 10 January 2020 VENUE : Madhava Lecture Hall, ICTS Bangalore Machine learning techniques, especially “deep learning” using multilayer n
From playlist Statistical Physics of Machine Learning 2020
Daniel Roberts: "Deep learning as a toy model of the 1/N-expansion and renormalization"
Machine Learning for Physics and the Physics of Learning 2019 Workshop IV: Using Physical Insights for Machine Learning "Deep learning as a toy model of the 1/N-expansion and renormalization" Daniel Roberts - Diffeo Institute for Pure and Applied Mathematics, UCLA November 20, 2019
From playlist Machine Learning for Physics and the Physics of Learning 2019
Statistical mechanics of deep learning by Surya Ganguli
Statistical Physics Methods in Machine Learning DATE: 26 December 2017 to 30 December 2017 VENUE: Ramanujan Lecture Hall, ICTS, Bengaluru The theme of this Discussion Meeting is the analysis of distributed/networked algorithms in machine learning and theoretical computer science in the
From playlist Statistical Physics Methods in Machine Learning
Aurora Clark (3/10/20): Topology in chemistry applications
Title: Topology in chemistry applications: Order parameters, collective variables and so much more Speaker: Aurora Clark, Department of Chemistry, Washington State University Abstract: In recent years the methods associated with topological data analysis have begun to be used to understa
From playlist DELTA (Descriptors of Energy Landscape by Topological Analysis), Webinar 2020
Statistical mechanics of deep learning - Surya Ganguli
Workshop on Theory of Deep Learning: Where next? Topic: Statistical mechanics of deep learning Speaker: Surya Ganguli Affiliation: Stanford University Date: October 18, 2019 For more video please visit http://video.ias.edu
From playlist Mathematics
Inspecting Neural Networks with CCA - A Gentle Intro (Explainable AI for Deep Learning)
Canonical Correlation Analysis is one of the methods used to explore deep neural networks. Methods like CKA and SVCCA reveal to us insights into how a neural network processes its inputs. This is often done by using CKA and SVCCA as a similarity measure for different activation matrices. I
From playlist Explainable AI Guide
Kim-Anh Lê Cao: Matrix factorisation techniques for data integration
Gene module detection methods aim to group genes with similar expression profiles to shed light into functional relationships and co-regulation, and infer gene regulatory networks. Methods proposed so far use clustering to group genes based on global similarity in their expression profiles
From playlist Probability and Statistics
Covariance (12 of 17) Covariance Matrix wth 3 Data Sets and Correlation Coefficients
Visit http://ilectureonline.com for more math and science lectures! To donate:a http://www.ilectureonline.com/donate https://www.patreon.com/user?u=3236071 We will find the correlation coefficients of the 3 data sets form the previous 2 videos. Next video in this series can be seen at:
From playlist COVARIANCE AND VARIANCE