Bioinformatics algorithms

Short Oligonucleotide Analysis Package

SOAP (Short Oligonucleotide Analysis Package) is a suite of bioinformatics software tools from the BGI Bioinformatics department enabling the assembly, alignment, and analysis of next generation DNA sequencing data. It is particularly suited to short read sequencing data. All programs in the SOAP package may be used free of charge and are distributed under the GPL open source software license. (Wikipedia).

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Simple double integral

Download the free PDF http://tinyurl.com/EngMathYT This video shows how to integrate over rectangles. The ideas use double integrals and are seen in university mathematics.

From playlist Several Variable Calculus / Vector Calculus

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Tutorial - double integrals

Download the free PDF http://tinyurl.com/EngMathYT A tutorial on the basics of setting up and evaluating double integrals. We show how to sketch regions of integration, their description, and how to reverse the order of integration.

From playlist Several Variable Calculus / Vector Calculus

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5C. RNA 1: Microarrays, Library Sequencing and Quantitation Concepts

MIT HST.508 Genomics and Computational Biology, Fall 2002 Instructor: George Church View the complete course: https://ocw.mit.edu/courses/hst-508-genomics-and-computational-biology-fall-2002/ YouTube Playlist: https://www.youtube.com/playlist?list=PLUl4u3cNGP61gaHWysmlYNeGsuUI8y5GV We wil

From playlist HST.508 Genomics and Computational Biology, Fall 2002

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Integration Flashcards

This video provides flashcards for common integration formulas. http://mathispower4u.com

From playlist Indefinite Integration

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Applications of double integrals: examples

Free ebook http://tinyurl.com/EngMathYT Example of how to apply double integrals to compute mass and moments of thin plates.

From playlist Engineering Mathematics

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Nucleic Acids: DNA and RNA

We've been hearing about DNA since the third grade, and we all know that it's a double helix with little ladder rungs. But now we are ready to understand this molecule on a more fundamental level, which will enable to us to understand how this molecule can serve as the genetic code. Let's

From playlist Biochemistry

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Fitting a polynomial with GeoGebra | Algebraic Calculus One | Anna Tomskova

Dr Anna Tomskova shows how to use GeoGebra to fit a polynomial to a sequence and then use that for extrapolation and interpolation. ************************ Screenshot PDFs for my videos are available at the website http://wildegg.com. These give you a concise overview of the contents of

From playlist Algebraic Calculus One

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Lec 34 | MIT 7.012 Introduction to Biology, Fall 2004

Human Polymorphisms and Cancer Classification (Prof. Eric Lander) View the complete course: http://ocw.mit.edu/7-012F04 License: Creative Commons BY-NC-SA More information at http://ocw.mit.edu/terms More courses at http://ocw.mit.edu

From playlist MIT 7.012 Introduction to Biology, Fall 2004

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Lecture 10: Association with Markers

MIT HST.512 Genomic Medicine, Spring 2004 Instructor: Dr. Marco F. Ramoni View the complete course: https://ocw.mit.edu/courses/hst-512-genomic-medicine-spring-2004/ YouTube Playlist: https://www.youtube.com/watch?v=_-gQchCLmXk&list=PLUl4u3cNGP613PJMNmRjAIdBr76goU1V5 I'm going to talk ab

From playlist MIT HST.512 Genomic Medicine, Spring 2004

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Lecture 3: Measurement Techniques

MIT HST.512 Genomic Medicine, Spring 2004 Instructor: Dr. Atul J. Butte View the complete course: https://ocw.mit.edu/courses/hst-512-genomic-medicine-spring-2004/ YouTube Playlist: https://www.youtube.com/watch?v=_-gQchCLmXk&list=PLUl4u3cNGP613PJMNmRjAIdBr76goU1V5 Discussion of paper: C

From playlist MIT HST.512 Genomic Medicine, Spring 2004

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Lecture 17: Direct Prediction of Outcome / Mortality

MIT HST.512 Genomic Medicine, Spring 2004 Instructor: Dr. Peter Park View the complete course: https://ocw.mit.edu/courses/hst-512-genomic-medicine-spring-2004/ YouTube Playlist: https://www.youtube.com/watch?v=_-gQchCLmXk&list=PLUl4u3cNGP613PJMNmRjAIdBr76goU1V5 Today I'll just talk a li

From playlist MIT HST.512 Genomic Medicine, Spring 2004

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Addition on Conjugated Polyunsaturated Systems

Uh oh. More than one double bond? Makes things trickier. Make sure you understand the resonance involved in the intermediate! Addition on conjugated polyunsaturated systems will be less confusing if you follow Dave's arrows. Watch the whole Organic Chemistry playlist: http://bit.ly/ProfDa

From playlist Organic Chemistry

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Set Theory: Types of Sets, Unions and Intersections

We've already learned a little bit about set theory when we first started using interval notation. Let's expand on this a little bit to include sets that merely list some elements, so that we can understand how to find the union and intersection of two sets. This is good notation to know r

From playlist Algebra 1 & 2

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10A. Networks 2: Molecular Computing, Self-assembly, Genetic Algorithms, Neural Networks

MIT HST.508 Genomics and Computational Biology, Fall 2002 Instructor: George Church View the complete course: https://ocw.mit.edu/courses/hst-508-genomics-and-computational-biology-fall-2002/ YouTube Playlist: https://www.youtube.com/playlist?list=PLUl4u3cNGP61gaHWysmlYNeGsuUI8y5GV Today

From playlist HST.508 Genomics and Computational Biology, Fall 2002

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Lecture 18: Case Hx: Cancer Diagnostics

MIT HST.512 Genomic Medicine, Spring 2004 Instructor: Dr. Todd Golub View the complete course: https://ocw.mit.edu/courses/hst-512-genomic-medicine-spring-2004/ YouTube Playlist: https://www.youtube.com/watch?v=_-gQchCLmXk&list=PLUl4u3cNGP613PJMNmRjAIdBr76goU1V5 I'm going to start by giv

From playlist MIT HST.512 Genomic Medicine, Spring 2004

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Mod-02 Lec-14 Lithography - II

Nano structured materials-synthesis, properties, self assembly and applications by Prof. A.K. Ganguli,Department of Nanotechnology,IIT Delhi.For more details on NPTEL visit http://nptel.ac.in

From playlist IIT Delhi: Nano structured materials-synthesis, properties, self assembly and applications | CosmoLearning.org Materials Science

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6A. RNA 2: Clustering by Gene or Condition and Other Regulon Data Sources Nucleic Acid ...

MIT HST.508 Genomics and Computational Biology, Fall 2002 Instructor: George Church View the complete course: https://ocw.mit.edu/courses/hst-508-genomics-and-computational-biology-fall-2002/ YouTube Playlist: https://www.youtube.com/playlist?list=PLUl4u3cNGP61gaHWysmlYNeGsuUI8y5GV The le

From playlist HST.508 Genomics and Computational Biology, Fall 2002

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Integration + partial fractions

Free ebook http://tinyurl.com/EngMathYT An example on how to integrate using partial fractions.

From playlist A second course in university calculus.

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JupyterLab keyboard shortcut editor

Demonstration of using the keyboard shortcut editor using JupyterLab

From playlist JupyterLab Documentation

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Aging Research at Yale: Question and Answer Session

Jocelyn Maminta, News 8 Medical Reporter and Veteran Journalist, moderates the question and answer session of the Yale Claude D. Pepper Symposium Aging Research at Yale: Past, Present and Future.

From playlist Aging Research at Yale: Past, Present and Future

Related pages

De Bruijn graph | Sequence alignment