Bioinformatics algorithms | Hidden Markov models

Island algorithm

The island algorithm is an algorithm for performing inference on hidden Markov models, or their generalization, dynamic Bayesian networks.It calculates the marginal distribution for each unobserved node, conditional on any observed nodes. The island algorithm is a modification of belief propagation. It trades smaller memory usage for longer running time: while belief propagation takes O(n) time and O(n) memory, the island algorithm takes O(n log n) time and O(log n) memory. On a computer with an unlimited number of processors, this can be reduced to O(n) total time, while still taking only O(log n) memory. (Wikipedia).

Video thumbnail

Centrality - Intro to Algorithms

This video is part of an online course, Intro to Algorithms. Check out the course here: https://www.udacity.com/course/cs215.

From playlist Introduction to Algorithms

Video thumbnail

Compute E Solution - Applied Cryptography

This video is part of an online course, Applied Cryptography. Check out the course here: https://www.udacity.com/course/cs387.

From playlist Applied Cryptography

Video thumbnail

Build a Heap - Intro to Algorithms

This video is part of an online course, Intro to Algorithms. Check out the course here: https://www.udacity.com/course/cs215.

From playlist Introduction to Algorithms

Video thumbnail

Using the property of equality to solve equations with exponents

πŸ‘‰ Learn how to solve exponential equations. An exponential equation is an equation in which a variable occurs as an exponent. To solve an exponential equation, we isolate the exponential part of the equation. Then we take the log of both sides. Note that the base of the log should correspo

From playlist Solve Exponential Equations without a Calculator

Video thumbnail

Solving an exponential equation using the one to one property 16^x + 2 = 6

πŸ‘‰ Learn how to solve exponential equations. An exponential equation is an equation in which a variable occurs as an exponent. To solve an exponential equation, we isolate the exponential part of the equation. Then we take the log of both sides. Note that the base of the log should correspo

From playlist Solve Exponential Equations with Logarithms

Video thumbnail

Cbc Implementation Solution - Applied Cryptography

This video is part of an online course, Applied Cryptography. Check out the course here: https://www.udacity.com/course/cs387.

From playlist Applied Cryptography

Video thumbnail

Learn how to get the same bases to solve an exponential equation

πŸ‘‰ Learn how to solve exponential equations. An exponential equation is an equation in which a variable occurs as an exponent. To solve an exponential equation, we isolate the exponential part of the equation. Then we take the log of both sides. Note that the base of the log should correspo

From playlist Solve Exponential Equations without a Calculator

Video thumbnail

Use inverse operation to solve exponential equation without one to one property

πŸ‘‰ Learn how to solve exponential equations. An exponential equation is an equation in which a variable occurs as an exponent. To solve an exponential equation, we isolate the exponential part of the equation. Then we take the log of both sides. Note that the base of the log should correspo

From playlist Solve Exponential Equations with Logarithms

Video thumbnail

Edward Ionides: Island filters for inference on metapopulation dynamics

Low-dimensional compartment models for biological systems can be fitted to time series data using Monte Carlo particle filter methods. As dimension increases, for example when analyzing a collection of spatially coupled populations, particle filter methods rapidly degenerate. We show that

From playlist Probability and Statistics

Video thumbnail

Statistical Rethinking Fall 2017 - week06 lecture10

Week 06, lecture 10 for Statistical Rethinking: A Bayesian Course with Examples in R and Stan, taught at MPI-EVA in Fall 2017. This lecture covers Chapter 8. Slides are available here: https://speakerdeck.com/rmcelreath Additional information on textbook and R package here: http://xcel

From playlist Statistical Rethinking Fall 2017

Video thumbnail

Statistical Rethinking 2022 Lecture 08 - Markov chain Monte Carlo

Slides and other course materials: https://github.com/rmcelreath/stat_rethinking_2022 Music: Intro: https://www.youtube.com/watch?v=E06X1NXRdR4 Skate1 vid: https://www.youtube.com/watch?v=GCr0EO41t8g Skate1 music: https://www.youtube.com/watch?v=o3WvAhOAoCg Skate2 vid: https://www.youtube

From playlist Statistical Rethinking 2022

Video thumbnail

Statistical Rethinking 2023 - 08 - Markov Chain Monte Carlo

Course materials: https://github.com/rmcelreath/stat_rethinking_2023 Intro video: https://www.youtube.com/watch?v=Q3jVk6k6CGY Intro music: https://www.youtube.com/watch?v=kNRIFhkYONc Outline 00:00 Introduction 13:08 King Markov 18:14 MCMC 28:00 Hamiltonian Monte Carlo 39:32 Pause 40:06 N

From playlist Statistical Rethinking 2023

Video thumbnail

Statistical Rethinking Winter 2019 Lecture 10

Lecture 10 of the Dec 2018 through March 2019 edition of Statistical Rethinking: A Bayesian Course with R and Stan. This lecture covers Chapter 9, Markov Chain Monte Carlo.

From playlist Statistical Rethinking Winter 2019

Video thumbnail

Statistical Rethinking - Lecture 11

Lecture 11 - Markov chain Monte Carlo - Statistical Rethinking: A Bayesian Course with R Examples

From playlist Statistical Rethinking Winter 2015

Video thumbnail

Lecture 10 - Data Structures for Graphs

This is Lecture 10 of the CSE373 (Analysis of Algorithms) course taught by Professor Steven Skiena [http://www.cs.sunysb.edu/~skiena/] at Stony Brook University in 2007. The lecture slides are available at: http://www.cs.sunysb.edu/~algorith/video-lectures/2007/lecture10.pdf More informa

From playlist CSE373 - Analysis of Algorithms - 2007 SBU

Video thumbnail

Stoer-Wagner: a simple min-cut algorithm

This isn't a thriller unfortunately... but it is a description of a simple min-cut algorithm [1]! #SoME1 Contents 0:00 Intro 0:29 Definitions 1:23 Intuition 2:27 Algorithm 4:21 Running Time 6:55 Correctness 11:35 Haiku [1] Stoer, Mechthild, and Frank Wagner. "A simple min cut algorithm."

From playlist Summer of Math Exposition Youtube Videos

Video thumbnail

Solve an exponential equation using one to one property and isolating the exponent

πŸ‘‰ Learn how to solve exponential equations. An exponential equation is an equation in which a variable occurs as an exponent. To solve an exponential equation, we isolate the exponential part of the equation. Then we take the log of both sides. Note that the base of the log should correspo

From playlist Solve Exponential Equations with Logarithms

Video thumbnail

Math for Liberal Studies - Lecture 1.6.2 Using Kruskal's Algorithm

This is the second video for Math for Liberal Studies Section 1.6: Minimum Spanning Trees. In this video, I work through several examples using Kruskal's Algorithm for finding the minimum spanning tree for a weighted graph.

From playlist Math for Liberal Studies Lectures

Video thumbnail

Random Forest Algorithm | Random Forest Complete Explanation | Data Science Training | Edureka

πŸ”₯Edureka Data Scientist Course Master Program https://www.edureka.co/masters-program/data-scientist-certification (Use Code "π˜πŽπ”π“π”ππ„πŸπŸŽ") This Edureka tutorial explains Random Forest Algorithm in detail, important terms in random forest, working of random forest classifier, along with exa

From playlist Data Science Training Videos

Video thumbnail

Using one to one property when exponents do not have the same base, 25^(x+3) = 5

πŸ‘‰ Learn how to solve exponential equations. An exponential equation is an equation in which a variable occurs as an exponent. To solve an exponential equation, we isolate the exponential part of the equation. Then we take the log of both sides. Note that the base of the log should correspo

From playlist Solve Exponential Equations without a Calculator

Related pages

Big O notation | Marginal distribution | Belief propagation | Algorithm | Recursion